Welcome to my world

I'mEnes Dasdemir

Computational Biologist • Spatial Multi-Omics Researcher • Data Scientist
Exploring the spatial universe of cells from Istanbul to Houston

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My Journey

Education & Career

From the historic shores of Istanbul to the cutting-edge research facilities of Houston, each step shaped my path in computational biology.

Follow the ship through my journey

Undergraduate Studies

Istanbul University

Istanbul, Turkey

2015 - 2019

Foundations in molecular biology and computational methods. First exposure to the complexity of biological systems and bioinformatics.

Molecular Biology fundamentalsIntroduction to BioinformaticsResearch methodology

Featured Landmark: Maiden's Tower

Sailing across the Aegean Sea...

ERASMUS

Aristotle University of Thessaloniki

Thessaloniki, Greece

2019 - 2020

Advanced training in bioinformatics and single-cell genomics. Developed computational pipelines for RNA-seq analysis and spatial transcriptomics.

Single-cell RNA-seq analysisComputational pipeline development

Featured Landmark: White Tower of Thessaloniki

Returning to the Bosphorus...

Undergraduate Research Fellow

Koç University

Istanbul, Turkey

2020

Advanced quantum biology training with focus on systems biology and machine learning applications.

Quantum BiologyMachine Learning in Genomics

Featured Landmark: Taksim Tünel

Crossing the Atlantic...

PhD Student - Bioinformatician

University of Houston - Seq-N-Edit Core

Houston, Texas

2022 - 2025

Completed a PhD in Biochemistry. Led bioinformatics analyses for the Seq-N-Edit genomics core facility. Developed pipelines for NGS data processing, single-cell analysis, and spatial transcriptomics.

NGS Pipeline DevelopmentCore Facility ManagementSpatial TranscriptomicsClient Consultation

Featured Landmark: Houston Skyline

Venturing into the Medical Center...

Graduate Student-non-UTHSCH

MD Anderson Cancer Center

Houston, Texas

2023 - 2026

Pioneering spatial multi-omics approaches in bone marrow and AML research. Integrating computational biology with clinical insights to advance cancer treatment.

Bone marrow spatial analysisAML research breakthroughsClinical collaborations

Featured Landmark: Texas Medical Center

Research & Publications

My Work

Selected publications and research projects in spatial multi-omics, computational biology, and cancer research.

Watch the ship sail as you explore

Nature Communications• 2024

Spatial Multi-omics Analysis of Bone Marrow Microenvironment in AML

Comprehensive spatial transcriptomic profiling revealing cellular neighborhoods in acute myeloid leukemia bone marrow samples.

Spatial TranscriptomicsAMLBone Marrow

Cell Reports• 2023

Single-Cell Analysis of Hematopoietic Stem Cell Niche Dynamics

Identifying key cellular interactions within the hematopoietic stem cell niche using single-cell RNA sequencing.

scRNA-seqHSCNiche Dynamics

Bioinformatics• 2023

Computational Pipeline for Integrating Multi-modal Spatial Data

Novel computational framework for integrating spatial proteomics and transcriptomics data in cancer research.

Multi-modalPipelineIntegration

Genome Biology• 2022

Machine Learning Approaches for Cell Type Deconvolution

Deep learning models for accurate cell type identification and deconvolution in bulk RNA-seq data.

Machine LearningDeconvolutionDeep Learning

Cancer Discovery• 2022

Spatial Organization of Immune Cells in Cancer Microenvironment

Characterizing the spatial distribution and interactions of immune cells within tumor microenvironment.

Immuno-oncologyTMESpatial Analysis

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Get In Touch

Let's Collaborate

Interested in spatial multi-omics, bone marrow research, or computational biology? I'm always open to discussing new ideas, collaborations, or opportunities.

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Global Horizon

Istanbul

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LAT 41.0082°N

LNG 28.9784°E

Houston

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LAT 29.7604°N

LNG 95.3698°W

SPATIAL MULTI-OMICS • COMPUTATIONAL BIOLOGY • DATA SCIENCE